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Sample GSM533402 Query DataSets for GSM533402
Status Public on Dec 31, 2010
Title Allelic status: HCC1599
Sample type genomic
 
Source name DNA from breast cancer cell line
Organism Homo sapiens
Characteristics cell line: HCC1599
catalog number: ATCC# CRL-2331
Treatment protocol standard Affymetrix protocol
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label standard Affymetrix protocol
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Data obtained from caBIG (https://cabig.nci.nih.gov)
HCC1599
Data processing Analyzed using dChip with the reference genotypes of sixty individuals obtained from the dChip website
 
Submission date Apr 14, 2010
Last update date Aug 19, 2016
Contact name Raj Chari
E-mail(s) rchari@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL3718
Series (2)
GSE21347 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer: allelic status
GSE21541 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer
Relations
Reanalyzed by GSE85838

Data table header descriptions
ID_REF
VALUE dChip Allelic Imbalance Status (0=Retention, 1=Imbalance, -1=Uninformative)

Data table
ID_REF VALUE
SNP_A-1886933 0
SNP_A-1902458 0
SNP_A-2131660 0
SNP_A-4221087 0
SNP_A-1884606 1
SNP_A-2235839 1
SNP_A-2218153 1
SNP_A-1919019 1
SNP_A-1815933 1
SNP_A-2115098 1
SNP_A-2264565 1
SNP_A-1788728 1
SNP_A-4218776 1
SNP_A-2082194 1
SNP_A-2135694 1
SNP_A-4220764 1
SNP_A-1796345 1
SNP_A-1789472 1
SNP_A-1934233 1
SNP_A-4207031 1

Total number of rows: 261563

Table truncated, full table size 4087 Kbytes.




Supplementary file Size Download File type/resource
GSM533402_EA06028_0140_10E_Nsp250_SS320539_PCRN.CEL.gz 26.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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