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Sample GSM5350102 Query DataSets for GSM5350102
Status Public on Dec 31, 2021
Title siH19-2 1
Sample type RNA
 
Source name MIA-PaCa2 transfected with siH19
Organism Homo sapiens
Characteristics pdac cell line: MIA-PaCa2
sirna: siH19-2
Treatment protocol FlexiTube siRNAs siH19-2, and AllStars Negative Control siRNA (QIAGEN, Hilden, Germany), 20 µg each, were transfected with lipofectamine 2000 (Thermo Fisher Scientific, Dreieich, Germany) according to the instructions of the manufacturer.
Growth protocol Cells were cultured in DMEM/high glucose (Sigma, Deisenhoffen, Germany), which was supplemented with 10% FCS (Sigma) and 25mmol/L HEPES (Thermo Fisher, Dreieich, Germany)
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the RNeasy Mini Kit (QIAGEN, Hilden, Germany).
Label biotin
Label protocol Affymetrix protocol
 
Hybridization protocol Microarray analyses was performed at the Microarray-Analytic Center of the Medical Faculty Mannheim, using Clariom™ D Assays (Thermo Fisher Scientific, Dreieich, Germany).
Scan protocol Microarray analyses was performed at the Microarray-Analytic Center of the Medical Faculty Mannheim, using Clariom™ D Assays (Thermo Fisher Scientific, Dreieich, Germany).
Description Gene expression data
Data processing Microarray analyses was performed at the Microarray-Analytic Center of the Medical Faculty Mannheim, using Clariom™ D Assays (Thermo Fisher Scientific, Dreieich, Germany).
 
Submission date Jun 01, 2021
Last update date Dec 31, 2021
Contact name Yiqiao Luo
E-mail(s) joey18280366917@gmail.com
Phone 015258790115
Organization name Section Surgical Research
Street address Im Neuenheimer Feld 365
City Heidelberg
State/province Deutschland
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL26356
Series (1)
GSE175865 Detection and validation of RNA H19-induced UHMK1 expression as a clinical pancreatic cancer progression marker

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
100009613_at 5.744140625
100009667_at 6.041015625
100009676_at 6.58203125
10000_at 6.639648438
10001_at 8.548828125
10002_at 6.118164063
100033413_at 5.704101563
100033416_at 4.782226563
100033422_at 4.978515625
100033423_at 5.317382813
100033424_at 4.618164063
100033425_at 4.20703125
100033426_at 8.94921875
100033434_at 8.03515625
100033435_at 8.9140625
100033437_at 4.666015625
100033439_at 5.559570313
100033440_at 3.147460938
100033444_at 3.966308594
100033453_at 3.548339844

Total number of rows: 39334

Table truncated, full table size 844 Kbytes.




Supplementary file Size Download File type/resource
GSM5350102_Luo_Herr_060619_si2_1_Clariom_D_Human_.CEL.gz 24.8 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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