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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 02, 2021 |
| Title |
ATRT, INI301 |
| Sample type |
genomic |
| |
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| Source name |
Fresh frozen sample
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| Organism |
Homo sapiens |
| Characteristics |
gender: Male
sample type: ATRT
disease state: tumour
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina Protocol
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| Label |
cy3, cy5
|
| Label protocol |
Illumina Protocol
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| |
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| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC Beadchip using Illumina protocol
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| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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| Data processing |
RnBeads Bioconductor R package (version 1.6.1)
matrix processed value definition: beta-value
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| Submission date |
Jun 01, 2021 |
| Last update date |
Aug 31, 2023 |
| Contact name |
Nicolas Servant |
| E-mail(s) |
Nicolas.Servant@curie.fr
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| Organization name |
Institut Curie
|
| Street address |
26 rue d'ulm
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| City |
Paris Cedex 05 |
| ZIP/Postal code |
75248 |
| Country |
France |
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| Platform ID |
GPL21145 |
| Series (2) |
| GSE175892 |
Genome-wide DNA methylation profiling of SCCOHT and SMARCB1-mutated rhabdoid tumours |
| GSE175893 |
SMARCA4-deficient rhabdoid tumours show intermediate molecular features between SMARCB1-deficient rhabdoid tumours and small cell carcinomas of the ovary, hypercalcaemic type. |
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| Relations |
| Reanalyzed by |
GSE242089 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5350857_204082600104_R01C01_Grn.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| GSM5350857_204082600104_R01C01_Red.idat.gz |
7.1 Mb |
(ftp)(http) |
IDAT |
| Processed data are available on Series record |
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