NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM5356526 Query DataSets for GSM5356526
Status Public on Jun 04, 2021
Title 88_Mix_NO_DLBCL
Sample type RNA
 
Source name NO_DLBCL_GCB
Organism Homo sapiens
Characteristics gender: Male
tissue: FFPE
status after 5 years: Alive
age: 52
ann arbor stage: IV
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was isolated from fresh frozen with TRIzol (Invitrogen) and Rneasy Mini Kit (Qiagen) and from deparaffinized 10 μm sections of FFPE tissues with the Tissue Preparation System (TPS) robot (Siemens Healthcare Diagnostics). RNA was quantifies with the Qubit RNA BR Assay kit with the Qubit Fluorometer (Invitrogen).
Label Fluorescent tag barcodes
Label protocol See manufacturer's protocol for the NanoString nCounter Assay System
 
Hybridization protocol See manufacturer's protocol for the NanoString nCounter Assay System
Scan protocol See manufacturer's protocol for the NanoString nCounter Assay System
Description Osseous_23
Data processing Data was log2 transformed and standardized by geometric mean, followed by normalization with the housekeeping genes using the 'NanoStringNorm' package in R. Further analysis was additionally performed with R.
 
Submission date Jun 03, 2021
Last update date Jun 04, 2021
Contact name Ruben de Groen
E-mail(s) r.a.l.de_groen@lumc.nl
Organization name Leiden University Medical Center
Department Hematology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL30227
Series (1)
GSE176126 Gene-expression profiling of osseous and non-osseous DLBCL with the NanoString nCounter technology

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ABCD3 -0.203796182
AHCY -0.044984591
AIF1 -0.291591288
AKAP1 -0.306809106
ARHGEF5 -0.378605993
ARID1A -0.336074141
ASB13 -0.357535167
ATP5G1 -0.219794402
ATP6V0C -0.06059261
ATRAID -0.219794402
BCL2A1 -0.35948617
BCL6 -0.128487492
BIRC3 0.474372233
BLK -0.231500416
C1QB -0.325928929
C1S 0.01471608
C3AR1 -0.378996193
C4A -0.329830934
CASP4 -0.119903081
CCDC50 -0.209258989

Total number of rows: 253

Table truncated, full table size 4 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap