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Sample GSM5356535 Query DataSets for GSM5356535
Status Public on Jun 04, 2021
Title 35_PB_DLBCL
Sample type RNA
 
Source name PB_DLBCL
Organism Homo sapiens
Characteristics gender: Male
tissue: FFPE
status after 5 years: Alive
age: 70
ann arbor stage: IE
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was isolated from fresh frozen with TRIzol (Invitrogen) and Rneasy Mini Kit (Qiagen) and from deparaffinized 10 μm sections of FFPE tissues with the Tissue Preparation System (TPS) robot (Siemens Healthcare Diagnostics). RNA was quantifies with the Qubit RNA BR Assay kit with the Qubit Fluorometer (Invitrogen).
Label Fluorescent tag barcodes
Label protocol See manufacturer's protocol for the NanoString nCounter Assay System
 
Hybridization protocol See manufacturer's protocol for the NanoString nCounter Assay System
Scan protocol See manufacturer's protocol for the NanoString nCounter Assay System
Description Osseous_32
Data processing Data was log2 transformed and standardized by geometric mean, followed by normalization with the housekeeping genes using the 'NanoStringNorm' package in R. Further analysis was additionally performed with R.
 
Submission date Jun 03, 2021
Last update date Jun 04, 2021
Contact name Ruben de Groen
E-mail(s) r.a.l.de_groen@lumc.nl
Organization name Leiden University Medical Center
Department Hematology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL30227
Series (1)
GSE176126 Gene-expression profiling of osseous and non-osseous DLBCL with the NanoString nCounter technology

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ABCD3 -0.228500694
AHCY -0.185128231
AIF1 -0.080791677
AKAP1 -0.216975144
ARHGEF5 -0.230927125
ARID1A -0.188767878
ASB13 -0.213032193
ATP5G1 -0.181488584
ATP6V0C -0.018311066
ATRAID -0.171782858
BCL2A1 -0.189374486
BCL6 -0.17117625
BIRC3 0.241923711
BLK -0.214245409
C1QB 0.452719946
C1S -0.055010842
C3AR1 -0.191800917
C4A -0.148428455
CASP4 -0.113245198
CCDC50 -0.153584622

Total number of rows: 253

Table truncated, full table size 4 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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