|
| Status |
Public on Jun 05, 2023 |
| Title |
TLBL35 Pediatric T-cell lymphoblastic lymphoma |
| Sample type |
genomic |
| |
|
| Source name |
Cervical LN
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Pediatric T-cell lymphoblastic lymphoma
gender: Female
tissue preparation: frozen tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAs from frozen tissues samples were extracted using the QIAamp DNA Mini Kit.
|
| Label |
Biotin
|
| Label protocol |
CytoScan™ Reagent Kit / 901808,t/GPL16131
|
| |
|
| Hybridization protocol |
Samples were hybridized onto Cytoscan HD arrays Cytoscan HD and were washed and stained with GeneChip Fluidics Station 450 (Affymetrix)
|
| Scan protocol |
GeneChip Scanner 3000 7G (Affymetrix)
|
| Description |
Cytoscan HD
TLBL35
|
| Data processing |
Nexus biodiscovery 9.0 edition Software
Gains and losses were evaluated with visual inspection by 2 different observers using Nexus Biodiscovery software (Biodiscovery, Hawthorne CA, USA). The CNAs with a minimum size of 100kb were considered real. Loss of heterozigosity regions where considered when size was >5Mb.
|
| |
|
| Submission date |
Jun 17, 2021 |
| Last update date |
Jun 05, 2023 |
| Contact name |
Joan Enric Ramiz-Zaldivar |
| E-mail(s) |
ramis@clinic.cat
|
| Phone |
+34 932275400
|
| Organization name |
IDIBAPS
|
| Department |
Molecular Pathology Laboratory
|
| Lab |
Centre Esther Koplowitz (CEK)
|
| Street address |
Rosselló, 153
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL16131 |
| Series (2) |
| GSE178421 |
Global genetic profiling of a pediatric series of T-cell lymphoblastic lymphoma [Cytoscan] |
| GSE178427 |
Global genetic profiling of a pediatric series of T-cell lymphoblastic lymphoma |
|
