|
Status |
Public on Jun 05, 2023 |
Title |
T-cell lymphoblastic lymphoma 26 |
Sample type |
genomic |
|
|
Source name |
Mediastinal LN
|
Organism |
Homo sapiens |
Characteristics |
tissue: T-cell lymphoblastic lymphoma gender: Male tissue preparation: FFPE
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA from formalin-fixed paraffin-embedded (FFPE) tissue was extracted after dewaxing and proteinase K digestion applying standard phenol/chloroform purification procedures
|
Label |
Biotin
|
Label protocol |
Affymetrix OncoScan™ FFPE Assay kit
|
|
|
Hybridization protocol |
Affymetrix OncoScan™ FFPE Assay kit
|
Scan protocol |
Affymetrix® GeneChip® Scanner 3000G to detect target bound to Oncoscan array after staining with Biotin.
|
Description |
Hybridized to Affymetrix OncoScan FFPE Assay TLBL26
|
Data processing |
Nexus biodiscovery software Gains and losses were evaluated with visual inspection by 2 different observers using Nexus Biodiscovery software (Biodiscovery, Hawthorne CA, USA). The CNAs with a minimum size of 100kb were considered real. Loss of heterozigosity regions where considered when size was >5Mb.
|
|
|
Submission date |
Jun 17, 2021 |
Last update date |
Jun 05, 2023 |
Contact name |
Joan Enric Ramiz-Zaldivar |
E-mail(s) |
ramis@clinic.cat
|
Phone |
+34 932275400
|
Organization name |
IDIBAPS
|
Department |
Molecular Pathology Laboratory
|
Lab |
Centre Esther Koplowitz (CEK)
|
Street address |
Rosselló, 153
|
City |
Barcelona |
ZIP/Postal code |
08036 |
Country |
Spain |
|
|
Platform ID |
GPL21558 |
Series (2) |
GSE178426 |
Global genetic profiling of a pediatric series of T-cell lymphoblastic lymphoma [Oncoscan] |
GSE178427 |
Global genetic profiling of a pediatric series of T-cell lymphoblastic lymphoma |
|