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Sample GSM5391174 Query DataSets for GSM5391174
Status Public on Jan 04, 2022
Title model brain after BHD intervention Replicate 2
Sample type RNA
 
Source name brain,BHD intervention 7days
Organism Rattus norvegicus
Characteristics tissue: brain
strain: male
Growth protocol Drink and eat freely
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions
Label Cy3
Label protocol 10 µg of total RNA were primed with 2 µl of 100 µM T16N2 DNA primer at 70°C for 10 min, then reversed transcribed at 42°C for 1 h in the presence of 400 U SuperScript II RTase (Invitrogen), and 100 µM each dATP, dTTP, dGTP, with 25 µM dCTP, 25 µM Cy3-label
 
Hybridization protocol Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential
Scan protocol Scanned on an Agilent G2505C scanner.
Images were quantified using Agilent Feature Extraction Software (version A.10.7.1.1).
Description Biological replicate 4 of 4. middle cerebral artery embolization model rat hippocampus after BHD intervention.7days.
Data processing Agilent Feature Extraction Software (v 10.7.1.1) was used for background subtraction and LOWESS normalization.
 
Submission date Jun 17, 2021
Last update date Jan 04, 2022
Contact name Bo-wei CHEN
E-mail(s) 201207020217@stu.hnucm.edu.cn
Phone 86-0731-85366925
Organization name Hunan University of Chinese Medicine
Street address No. 95 Shaoshan Middle Road
City Changsha
ZIP/Postal code 410007
Country China
 
Platform ID GPL30293
Series (1)
GSE178439 Effects of Buyang Huanwu Decoction on circRNA-miRNA-mRNA transcriptional network of rats with cerebral ischemia

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
RNO_CIRCpedia_10001_0_22 7.928105251
RNO_CIRCpedia_10005_0_8 5.360846819
RNO_CIRCpedia_10010_10_27 9.539639835
RNO_CIRCpedia_10014_6_14 5.865840066
RNO_CIRCpedia_10018_14_34 6.638040755
RNO_CIRCpedia_10020_0_24 8.01915948
RNO_CIRCpedia_10021_11_19 8.268339979
RNO_CIRCpedia_10023_12_12 7.481717552
RNO_CIRCpedia_10027_14_4 9.149489232
RNO_CIRCpedia_10029_0_26 11.82620804
RNO_CIRCpedia_10038_15_9 13.9671969
RNO_CIRCpedia_10039_14_19 10.57814076
RNO_CIRCpedia_1003_7_20 7.483232597
RNO_CIRCpedia_10041_7_11 8.596408015
RNO_CIRCpedia_10046_7_9 6.781546496
RNO_CIRCpedia_10047_0_17 9.892222968
RNO_CIRCpedia_10050_0_12 9.796053528
RNO_CIRCpedia_10053_16_13 8.942073455
RNO_CIRCpedia_10060_7_7 9.962382548
RNO_CIRCpedia_10067_0_16 6.322162455

Total number of rows: 60152

Table truncated, full table size 1868 Kbytes.




Supplementary file Size Download File type/resource
GSM5391174_BHD2.txt.gz 8.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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