|
| Status |
Public on Mar 29, 2022 |
| Title |
Sox9 Low sample 1 |
| Sample type |
SRA |
| |
|
| Source name |
small intestine
|
| Organism |
Mus musculus |
| Characteristics |
tissue: small intestine
strain: C57BL6/2J
population: Sox9
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared according to the TriLink CleanTag Small RNA Library Preparation Kit protocol
FACS of various populations of the intestinal epithelium
Libraries were prepared using the TriLink CleanTag Small RNA Ligation kit
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Sox9 Low sorted intestinal cells - sample 1
SI_ISC-types_normalized_miR_counts.csv.gz
BC180_chow_Low_GCCAAT_L001_R1
BC180_Low_GCCAAT_L001_R1
|
| Data processing |
Sequenciing was aligned and quantiitated using miRquant2.0.
Genome_build: mm9
Supplementary_files_format_and_content: Processed data contains barcodes, gene list, and counts matrix.
|
| |
|
| Submission date |
Jun 24, 2021 |
| Last update date |
Mar 29, 2022 |
| Contact name |
Praveen Sethupathy |
| Organization name |
Cornell University
|
| Lab |
Dr. Sethupathy Lab
|
| Street address |
Cornell University College of Veterinary Medicine, Box 17
|
| City |
Ithica |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
|
| Platform ID |
GPL17021 |
| Series (1) |
| GSE178826 |
Multi-omic analysis defines the first microRNA atlas across all small intestinal epithelial lineages and reveals microRNA markers of almost all major cell types |
|
| Relations |
| BioSample |
SAMN19856837 |
| SRA |
SRX11218795 |
