|
Status |
Public on Jul 14, 2021 |
Title |
035B_S34 RNA-seq |
Sample type |
SRA |
|
|
Source name |
Lymphoma
|
Organism |
Canis lupus familiaris |
Characteristics |
tissue: lymphoma tumour immunophenotype: Unknown time of sampling: 6 weeks into treatment
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina MiSeq |
|
|
Data processing |
Reads aligned to CanFam3.1 reference genome with Hisat2 2.1.0 Gene annotation and expression with StringTie 1.3.3 Raw read counts calculated using prepDE .py from Ballgown R package FPKM values calculated using the Ballgown R package Genome_build: CanFam3.1 reference genome Supplementary_files_format_and_content: Tab-delimited text files include either raw read count or FPKM values for
|
|
|
Submission date |
Jul 12, 2021 |
Last update date |
Jul 14, 2021 |
Contact name |
Miles Mee |
E-mail(s) |
miles.william.mee@gmail.com
|
Organization name |
Ontario Institute for Cancer Research
|
Street address |
661 University Ave Suite 510
|
City |
Toronto |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
|
|
Platform ID |
GPL22370 |
Series (1) |
GSE179920 |
Longitudinal Study of Transcriptomic Changes Occurring Over the Course of CHOP Treatment in Canine Lymphoma |
|
Relations |
BioSample |
SAMN20169854 |
SRA |
SRX11410898 |