|
| Status |
Public on Aug 16, 2021 |
| Title |
WT_S4 |
| Sample type |
SRA |
| |
|
| Source name |
Bacteria
|
| Organism |
Staphylococcus lugdunensis |
| Characteristics |
genotype/variation: Wild Type
|
| Treatment protocol |
Wild type strain versus complete deltion of agrA gene in S. lugdunensis
|
| Growth protocol |
37°C - Aerobic - Brain Heart Infusion agar
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Direct-zol RNA miniprep kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
fastqc
STAR alingment
Htseq
EdgeR package
Genome_build: S. lugdunensis reference genome: N920143 NC_017353.1
Supplementary_files_format_and_content: Count tables
|
| |
|
| Submission date |
Aug 11, 2021 |
| Last update date |
Aug 17, 2021 |
| Contact name |
Francois Gravey |
| E-mail(s) |
francois.gravey@unicaen.fr
|
| Organization name |
Normandy Université
|
| Department |
Microbiology
|
| Lab |
GRAM 2.0
|
| Street address |
Esplanade de la paix
|
| City |
Caen |
| State/province |
Normandy |
| ZIP/Postal code |
14032 |
| Country |
France |
| |
|
| Platform ID |
GPL29710 |
| Series (1) |
| GSE181857 |
Inactivation of the response regulator AgrA has a pleiotropic effect on biofilm formation, pathogenesis and stress response in Staphylococcus lugdunensis |
|
| Relations |
| BioSample |
SAMN20704576 |
| SRA |
SRX11715562 |
