|
| Status |
Public on Oct 23, 2023 |
| Title |
Acomys00 |
| Sample type |
SRA |
| |
|
| Source name |
ear
|
| Organism |
Acomys cahirinus |
| Characteristics |
age: Adult
tissue: ear
cell type: macrophages
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Single-cell suspensions were processed through Chromium 10X to generate single-cell cDNA libraries attached to microbeads
Microbeads were counted, and amplified by PCR, and the 3' end of the cDNA prepared for sequencing using a modified Nextera XT protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10X-Seifert-Acomys00-WT-20181217-3v2am_S1
|
| Data processing |
Raw sequencing data was processed through 10X Genomics CellRanger v2.2.0 using default parameters to obtain the gene expression matrices.
Genome_build: mm10 or Aco_one
Supplementary_files_format_and_content: mtx matrix files
|
| |
|
| Submission date |
Aug 15, 2021 |
| Last update date |
Oct 23, 2023 |
| Contact name |
Steve Potter |
| Organization name |
Cincinnati Children's Hospital Research Foundation
|
| Department |
Developmental Biology
|
| Street address |
240 Albert Sabin Way
|
| City |
Cincinnati |
| State/province |
Ohio |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platform ID |
GPL29848 |
| Series (1) |
| GSE182141 |
A subset of pro-inflammatory spiny mice macrophages promotes a regenerative phenotype in mouse fibroblasts |
|
| Relations |
| BioSample |
SAMN20801985 |
| SRA |
SRX11761233 |
