|
| Status |
Public on Mar 01, 2023 |
| Title |
scRNA-seq analysis of Pre-cancer pancreas cells - Replicate 3 |
| Sample type |
SRA |
| |
|
| Source name |
Msi2CreER-MycT58A Mouse
|
| Organism |
Mus musculus |
| Characteristics |
cell type: Pre-cancer pancreas cells
time: 5 weeks post-induction
|
| Treatment protocol |
In vivo tamoxifen induction of mice at 8 weeks of age. Pre-cancer cells collected 5 weeks after induction. Pancreas tumor cells collected 12 weeks after induction.
|
| Growth protocol |
Not applicable
|
| Extracted molecule |
total RNA |
| Extraction protocol |
According to 10x genomics instructions
scRNA-seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
Pre-cancer pancreas cells – replicate 3
|
| Data processing |
Cell Ranger v3.0
Seurat v3.0
Genome_build: mm10
Supplementary_files_format_and_content: h5
|
| |
|
| Submission date |
Aug 18, 2021 |
| Last update date |
Mar 01, 2023 |
| Contact name |
Michael Hamilton |
| E-mail(s) |
mihamilton@ucsd.edu
|
| Phone |
5303123999
|
| Organization name |
UCSD
|
| Street address |
2880 Torrey Pines Scenic Dr.
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL21103 |
| Series (1) |
| GSE182396 |
scRNA-seq analysis of Msi2CreER-MycT58A Mouse Pre-cancer and Pancreas ASCP tumor |
|
| Relations |
| BioSample |
SAMN20854389 |
| SRA |
SRX11820351 |
