|
| Status |
Public on Dec 31, 2021 |
| Title |
day 6 post amputation control |
| Sample type |
SRA |
| |
|
| Source name |
day 6 post amputation control
|
| Organism |
Ambystoma mexicanum |
| Characteristics |
tissue: Tail amputation stump
developmental stage: stage 42
treatment: control
timepoint: day 6 post amputation
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Single nuclei.
Single-nuclei RNA library using 10X Genomics platform, v3 chemistry.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Assignment of barcodes to cells and transcript quantification and clustering were performed using cellranger-6.0.0.
Genome_build: GSE136546_transcriptome.fa.gz
Supplementary_files_format_and_content: barcodes.tsv, features.tsv, matrix.mtx
Supplementary_files_format_and_content: Merged_filtered_feature_bc_matrix.h5
|
| |
|
| Submission date |
Sep 07, 2021 |
| Last update date |
Dec 31, 2021 |
| Contact name |
Jeramiah James Smith |
| E-mail(s) |
jjsmit3@uky.edu
|
| Phone |
(859)948-3674
|
| Organization name |
University of Kentucky
|
| Department |
Biology
|
| Street address |
101 Morgan Building
|
| City |
Lexington |
| State/province |
KY |
| ZIP/Postal code |
40506 |
| Country |
USA |
| |
|
| Platform ID |
GPL27159 |
| Series (1) |
| GSE183645 |
HDAC Inhibitor Titration of Transcription and Axolotl Tail Regeneration |
|
| Relations |
| BioSample |
SAMN21350088 |
| SRA |
SRX12725767 |
