|
Status |
Public on Sep 29, 2021 |
Title |
Cov2_SAT_3 |
Sample type |
SRA |
|
|
Source name |
Cov2_SAT
|
Organism |
Mesocricetus auratus |
Characteristics |
organ: Fat disease status: Cov2 SAT infection: SARS-Cov-2
|
Treatment protocol |
Mock infected or SARS-CoV-2 treated hamsters
|
Growth protocol |
Standard Golden Syrian Hamsters
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Fat tissue was harvested and lysed in TRIZOL and subjected to RNA extraction using Trizol extraction protocol RNA-seq libraries of polyadenylated RNA were prepared using the TruSeq RNA Library Prep Kit v2 (Illumina) or TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer’s instructions.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
Lucia87_indexG6
|
Data processing |
FastQC (v0.11.5) to check FASTQ quality. STAR alignment (v 2.6.1) Salmon quantification (0.11.2) Genome_build: Mesocricetus_auratus (ensembl MesAur1) Supplementary_files_format_and_content: Gene count matrix
|
|
|
Submission date |
Sep 08, 2021 |
Last update date |
Sep 29, 2021 |
Contact name |
Sean Houghton |
E-mail(s) |
seh4002@med.cornell.edu
|
Organization name |
Weill Cornell Medicine
|
Street address |
1300 York Ave
|
City |
New |
State/province |
NY |
ZIP/Postal code |
10065 |
Country |
USA |
|
|
Platform ID |
GPL24490 |
Series (1) |
GSE183714 |
Hyperglycemia in Acute COVID-19 is Characterized by Adipose Tissue Dysfunction and Insulin Resistance |
|
Relations |
BioSample |
SAMN21361355 |
SRA |
SRX12112761 |