|
Status |
Public on Jun 14, 2014 |
Title |
phc98039 |
Sample type |
RNA |
|
|
Source name |
liver tissue of subject 20, non-tumor
|
Organism |
Homo sapiens |
Characteristics |
tissue: liver
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
|
|
Hybridization protocol |
Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
Scan protocol |
GeneChips were scanned using the Affymetrix GCS3000 high resolution scanner (M10).
|
Description |
Gene expresion data from sample phc98039
|
Data processing |
The data were analyzed with the software of RMAExpress with custom CDF file, quantile normalization, background adjust, and median polish.
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|
|
Submission date |
Jun 17, 2010 |
Last update date |
Jun 14, 2014 |
Contact name |
Henry H Zhang |
Organization name |
NICHD
|
Department |
NICHD Bioinformatics and Scientific Programming Core
|
Street address |
49 Convent Drive
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892-4417 |
Country |
USA |
|
|
Platform ID |
GPL10553 |
Series (1) |
GSE22405 |
Gene expression profiling of liver cancers |
|