|
| Status |
Public on Apr 11, 2022 |
| Title |
Dnmt1_Manipulation_21645 |
| Sample type |
genomic |
| |
|
| Source name |
Esophagus, Mouse DNA, Tissue
|
| Organism |
Mus musculus |
| Characteristics |
Sex: Female
age_days: 186
site: Lab 1
strain: Mixed
cell line: NA
tissue: Esophagus
sorted cell type: NA
treatment: NA
pathology: NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated from tissue samples using the AllPrep DNA/RNA Mini Kit (QIAGEN)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Standard Illumina Protocol
|
| Description |
Dnmt1 Manipulation
204875570019_R04C02
|
| Data processing |
SeSAMe software v1.10
20210916_GEO_processed_matrix.csv (Normalized average Beta)
20210916_GEO_signal_intensity_matrix.csv (Unmethylated and methylated signal intensities)
|
| |
|
| Submission date |
Sep 19, 2021 |
| Last update date |
Apr 12, 2022 |
| Contact name |
Wanding Zhou |
| Organization name |
Children's Hospital of Philadelphia
|
| Department |
Pathology and Lab Medicine
|
| Street address |
3501 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platform ID |
GPL30650 |
| Series (1) |
| GSE184410 |
Mouse DNA methylation atlas using Infinium Mouse Methylation Beadchips |
|
