|
| Status |
Public on Sep 22, 2024 |
| Title |
Crimson DAF75 rep1 |
| Sample type |
SRA |
| |
|
| Source name |
fruit
|
| Organism |
Vitis vinifera |
| Characteristics |
graph condition: Crimson DAF75
tissue: peel of fruit
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from DCs using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.), accordance with the instructions of the kits used.
mRNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
G815_1_R1
|
| Data processing |
Illumina PE150/SE50 software used for basecalling.
Compare the clean reads to the reference sequence useing Hisat2 software
Use Stringtie software to splice the reads into transcripts and quantify them
Quantitative expression levels of all detected and predicted samples
|
| |
|
| Submission date |
Sep 23, 2021 |
| Last update date |
Sep 22, 2024 |
| Contact name |
Wenying Zhong |
| E-mail(s) |
hzauzhoujian@sina.com
|
| Organization name |
Huazhong Agricultural University
|
| Street address |
Shizi Street No.1
|
| City |
Wuhan |
| ZIP/Postal code |
430070 |
| Country |
China |
| |
|
| Platform ID |
GPL30515 |
| Series (1) |
| GSE184667 |
Transcriptomic analyses for grape peel color regulation under different grafting conditions |
|
| Relations |
| BioSample |
SAMN21571969 |
| SRA |
SRX12308896 |
