|
| Status |
Public on Oct 01, 2023 |
| Title |
Non-advanced adenomas cfDNA pool O |
| Sample type |
genomic |
| |
|
| Source name |
serum
|
| Organism |
Homo sapiens |
| Characteristics |
pathology: NAA
sample type: serum
molecule type: circulating cell-free DNA
|
| Extracted molecule |
other |
| Extraction protocol |
Circulating cell-free DNA was isolated from serum samples by a phenol-chloroform protocol
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
| Description |
Non-advanced adenomas (NAA) cfDNA pool O
NAA_O
|
| Data processing |
Genome Studio V2011.2
Normalized beta values (ssNoob, single-sample normalization out-of-band method)
|
| |
|
| Submission date |
Oct 22, 2021 |
| Last update date |
Oct 01, 2023 |
| Contact name |
María Gallardo-Gómez |
| E-mail(s) |
mgallardo@uvigo.es
|
| Organization name |
Universidad de Vigo
|
| Street address |
Campus As Lagoas Marcosende
|
| City |
Vigo |
| ZIP/Postal code |
36310 |
| Country |
Spain |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE186381 |
Methylation analysis of serum cfDNA pooled samples for the discovery of non-invasive biomarkers for colorectal cancer |
|
