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Sample GSM568606 Query DataSets for GSM568606
Status Public on Dec 01, 2010
Title hTERT immortalized cells, mutant p53 vector , passage 70
Sample type RNA
 
Source name Prostate
Organism Homo sapiens
Characteristics cell type: hTERT immortalized cells, mutant p53 vector , passage 70
Treatment protocol EP156T immortalized prostate cell cultures were grown in MCDB-153+ media under standard tissue culture conditions
Extracted molecule total RNA
Extraction protocol cells were trypsinized and pelleted after 3 days at logarithmic growth stage
Label biotin
Label protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
 
Hybridization protocol Affymetrix protocol
Scan protocol Affymetrix protocol
Data processing samples were taken at 33 points along the cultivation process and hybridized with the GeneChip Human Genome U133A 2.0 Array. The microarrays were processed using RMA (Irizarry et al. 2003) and normalized.
 
Submission date Jul 20, 2010
Last update date Jul 21, 2010
Contact name Yuval Tabach
E-mail(s) yuval.tabach@weizmann.ac.il
Phone 972-8-9344985
Organization name Weizmann Institute of Science
Department Molecular Cell Biology
Street address Hativat Givaty 30
City Raanana
ZIP/Postal code 43338
Country Israel
 
Platform ID GPL571
Series (1)
GSE23038 Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed

Data table header descriptions
ID_REF
VALUE RMA data

Data table
ID_REF VALUE
206700_s_at 7.196406
207647_at 3.934337
207646_s_at 4.626516
211461_at 5.572175
207909_x_at 3.788405
207912_s_at 3.74919
208281_x_at 5.038974
208282_x_at 3.800761
208307_at 4.590138
208332_at 5.952155
216351_x_at 4.138693
216544_at 4.283043
216842_x_at 6.336259
216922_x_at 4.462437
211460_at 4.441339
204409_s_at 7.768462
207063_at 4.449764
214131_at 6.699521
206922_at 6.97358
211403_x_at 5.979956

Total number of rows: 20953

Table truncated, full table size 405 Kbytes.




Supplementary file Size Download File type/resource
GSM568606_VR99Hu133A_2.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM568606_VR99Hu133A_2.CHP.gz 120.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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