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Sample GSM568611 Query DataSets for GSM568611
Status Public on Dec 01, 2010
Title hTERT immortalized cells, passage 80, reps a and b
Sample type RNA
 
Source name Prostate
Organism Homo sapiens
Characteristics cell type: hTERT immortalized cells, passage 80
Treatment protocol EP156T immortalized prostate cell cultures were grown in MCDB-153+ media under standard tissue culture conditions
Extracted molecule total RNA
Extraction protocol cells were trypsinized and pelleted after 3 days at logarithmic growth stage
Label biotin
Label protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
 
Hybridization protocol Affymetrix protocol
Scan protocol Affymetrix protocol
Data processing samples were taken at 33 points along the cultivation process and hybridized with the GeneChip Human Genome U133A 2.0 Array. The microarrays were processed using RMA (Irizarry et al. 2003) and normalized.
 
Submission date Jul 20, 2010
Last update date Jul 21, 2010
Contact name Yuval Tabach
E-mail(s) yuval.tabach@weizmann.ac.il
Phone 972-8-9344985
Organization name Weizmann Institute of Science
Department Molecular Cell Biology
Street address Hativat Givaty 30
City Raanana
ZIP/Postal code 43338
Country Israel
 
Platform ID GPL571
Series (1)
GSE23038 Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed

Data table header descriptions
ID_REF
VALUE RMA data

Data table
ID_REF VALUE
206700_s_at 7.117696424
207647_at 3.88436868
207646_s_at 4.748377883
211461_at 5.722784481
207909_x_at 3.948888358
207912_s_at 3.724455111
208281_x_at 4.666005852
208282_x_at 3.958293602
208307_at 4.597444756
208332_at 5.871729588
216351_x_at 4.144122599
216544_at 4.28868945
216842_x_at 6.519661102
216922_x_at 4.611586329
211460_at 4.339069567
204409_s_at 8.077777007
207063_at 4.685404037
214131_at 7.350281924
206922_at 6.975428222
211403_x_at 5.933631905

Total number of rows: 20953

Table truncated, full table size 466 Kbytes.




Supplementary file Size Download File type/resource
GSM568611_VR121Hu133A_2.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM568611_VR121Hu133A_2.CHP.gz 120.6 Kb (ftp)(http) CHP
GSM568611_VR122Hu133A_2.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM568611_VR122Hu133A_2.CHP.gz 120.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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