|
Status |
Public on Nov 25, 2021 |
Title |
wsj_A2: rat wt rep2 |
Sample type |
SRA |
|
|
Source name |
normal control liver
|
Organism |
Rattus norvegicus |
Characteristics |
Sex: male strain: SD tissue: liver condition: normal control
|
Treatment protocol |
helenalin group were treated with helenalin
|
Growth protocol |
model group and TA group were induced liver fibrosis by CCl4,normal group were given same dose normal saline
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from liver tissues with Trizol reagent NEBNext UltraTM RNA Library Prep Kit(NEB #E7490),AMPure XP system
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
We applied DESeq2 algorithm to filter the differentially expressed genes, after the significant analysis and FDR analysis under the following criteria: i) |log2FC| > 1 ; ii) Pvalue < 0.05. Genome_build: mm9
|
|
|
Submission date |
Nov 23, 2021 |
Last update date |
Nov 25, 2021 |
Contact name |
xing lin |
Organization name |
Guangxi medical university
|
Street address |
Shuangyong Road
|
City |
Nanning |
ZIP/Postal code |
530001 |
Country |
China |
|
|
Platform ID |
GPL25947 |
Series (1) |
GSE189402 |
Differential expression profile of liver fibrosis rats induced by CCl4 |
|
Relations |
BioSample |
SAMN23407560 |
SRA |
SRX13207950 |