|
| Status |
Public on Nov 25, 2021 |
| Title |
wsj_B3: rat model rep3 |
| Sample type |
SRA |
| |
|
| Source name |
hepatitis stage liver
|
| Organism |
Rattus norvegicus |
| Characteristics |
Sex: male
strain: SD
tissue: liver
condition: hepatitis stage
|
| Treatment protocol |
helenalin group were treated with helenalin
|
| Growth protocol |
model group and TA group were induced liver fibrosis by CCl4,normal group were given same dose normal saline
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from liver tissues with Trizol reagent
NEBNext UltraTM RNA Library Prep Kit（NEB #E7490）,AMPure XP system
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
We applied DESeq2 algorithm to filter the differentially expressed genes, after the significant analysis and FDR analysis under the following criteria: i) |log2FC| > 1 ; ii) Pvalue < 0.05.
Genome_build: mm9
|
| |
|
| Submission date |
Nov 23, 2021 |
| Last update date |
Nov 25, 2021 |
| Contact name |
xing lin |
| Organization name |
Guangxi medical university
|
| Street address |
Shuangyong Road
|
| City |
Nanning |
| ZIP/Postal code |
530001 |
| Country |
China |
| |
|
| Platform ID |
GPL25947 |
| Series (1) |
| GSE189402 |
Differential expression profile of liver fibrosis rats induced by CCl4 |
|
| Relations |
| BioSample |
SAMN23407556 |
| SRA |
SRX13207954 |
