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Sample GSM572 Query DataSets for GSM572
Status Public on Oct 03, 2001
Title HPR1_SAGE
Sample type SAGE
Anchor NlaIII
Tag Count 59661
Tag Length 10
 
Source name human peripheral retina
Organism Homo sapiens
Extracted molecule total RNA
 
Description Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE).
A normal peripheral retina from an 88-year-old female.
Patient had periocular malignancies that required exenteration of a normal eye as part of the clinically indicated surgical therapy. The eye was placed in saline after it was removed from the patient and peripheral retinal fragments were collected from regions outside the central arcades and frozen within 45 minutes of the surgical removal to ensure minimal degradation of mRNA molecules.
 
Submission date Sep 19, 2001
Last update date Nov 19, 2008
Contact name Dror Sharon
E-mail(s) dror_sharon@meei.harvard.edu
Phone 617-573-4347
Fax 617-573-3168
URL http://eyegene.meei.harvard.edu/
Organization name Massachusetts Eye and Ear
Department
Lab Ocular Molecular Genetics Laboratory
Street address 243 Charles St.
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL4
Series (1)
GSE10 eye-SAGE

Data table header descriptions
TAG Ten base SAGE tag
COUNT number of copies
TPM tags per million

Data table
TAG COUNT TPM
TGTGCTGAAC 774 12973.30
TTGGCCAGGC 673 11280.40
GTAGGAGCTG 522 8749.43
ACTTTTTCAA 520 8715.91
TTGGGGTTTC 463 7760.51
TTCATACACC 429 7190.63
GTGAAACCCC 395 6620.74
CAACTAATTC 309 5179.26
TCTCCATACC 289 4844.04
TACCATCAAT 269 4508.81
TTGGTCCTCT 241 4039.49
AGAAGGCCTG 222 3721.02
TAGGTTGTCT 210 3519.89
CCTGTAATCC 208 3486.36
TTGGTCAGGC 205 3436.08
TTGGAGATCT 194 3251.71
TCCCTATTAA 188 3151.14
GCCCTGTGCT 184 3084.09
AGAGCGCAGC 183 3067.33
TCAGATCTTT 182 3050.57

Total number of rows: 22812

Table truncated, full table size 425 Kbytes.




Supplementary data files not provided

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