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Sample GSM574 Query DataSets for GSM574
Status Public on Oct 03, 2001
Sample type SAGE
Anchor NlaIII
Tag Count 102417
Tag Length 10
Source name Human central retina (macula)
Organism Homo sapiens
Extracted molecule total RNA
Description Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE).
A normal macula from a 44-year-old male.
Patient had periocular malignancies that required exenteration of a normal eye as part of the clinically indicated surgical therapy. The eye was placed in saline after it was removed from the patient and macular fragments were collected. The retina fragment used for this library was approximately 6 mm in diameter and centered at the foveola. The tissue was frozen within 45 minutes of the surgical removal to ensure minimal degradation of mRNA molecules.
Submission date Sep 19, 2001
Last update date Nov 19, 2008
Contact name Dror Sharon
Phone 617-573-4347
Fax 617-573-3168
Organization name Massachusetts Eye and Ear
Lab Ocular Molecular Genetics Laboratory
Street address 243 Charles St.
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
Platform ID GPL4
Series (1)
GSE10 eye-SAGE

Data table header descriptions
TAG Ten base SAGE tag
COUNT number of copies
TPM tags per million

Data table
ACTTTTTCAA 2724 26597.15
TTCATACACC 1487 14519.07
CACCTAATTG 857 8367.75
TACCATCAAT 777 7586.63
CCCATCGTCC 724 7069.14
AAAACATTCT 509 4969.88
TGTACCTGTA 454 4432.86
GTAGGAGCTG 424 4139.94
CTAAGACTTC 386 3768.91
AAAAAAAAAA 364 3554.10
CCTTGAGTAC 303 2958.49
TTGGGGTTTC 293 2860.85
AGCCCTACAA 288 2812.03
GTGAAACCCC 286 2792.51
CACCCCTGAT 272 2655.81
TGTGCTGAAC 265 2587.46
CCACGTTCCA 246 2401.94
CTCATAAGGA 235 2294.54
ACACAGCAAG 224 2187.14
TTGGAGATCT 219 2138.32

Total number of rows: 33522

Table truncated, full table size 602 Kbytes.

Supplementary data files not provided

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