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Sample GSM5813774 Query DataSets for GSM5813774
Status Public on Jan 17, 2022
Title 106N
Sample type genomic
 
Source name Normal tissue
Organism Homo sapiens
Characteristics gender: F
disease state: Normal
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Beadchip were scanned using iscan standard recommended Illumina scanner setting
Data processing Genome studio v2011.1
 
Submission date Jan 12, 2022
Last update date Jan 18, 2022
Contact name Nurul Syakima Ab Mutalib
E-mail(s) syakima@ppukm.ukm.edu.my
Organization name Universiti Kebangsaan Malaysia
Department UKM Medical Molecular Biology Institute
Street address Jalan Yaacob Latiff
City Cheras
State/province Kuala Lumpur
ZIP/Postal code 56000
Country Malaysia
 
Platform ID GPL13534
Series (1)
GSE193535 Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K

Data table header descriptions
ID_REF
VALUE Beta value

Data table
ID_REF VALUE
cg00000957 0.817796368
cg00001349 0.700013906
cg00001583 0.121362755
cg00002028 0.104507315
cg00002719 0.085335349
cg00002837 0.469234236
cg00003202 0.047110413
cg00003287 0.225413307
cg00007036 0.949567301
cg00007898 0.025827407
cg00008004 0.078291814
cg00008647 0.249961066
cg00009292 0.14680526
cg00011717 0.875805003
cg00014168 0.640377197
cg00015930 0.95615897
cg00016238 0.919260201
cg00016996 0.97066287
cg00021576 0.116316647
cg00021933 0.881467886

Total number of rows: 409764

Table truncated, full table size 8930 Kbytes.




Supplementary file Size Download File type/resource
GSM5813774_9741779167_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM5813774_9741779167_R01C02_Red.idat.gz 4.3 Mb (ftp)(http) IDAT
Processed data included within Sample table

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