|
Status |
Public on Jan 17, 2022 |
Title |
106N |
Sample type |
genomic |
|
|
Source name |
Normal tissue
|
Organism |
Homo sapiens |
Characteristics |
gender: F disease state: Normal
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina protocol
|
|
|
Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
|
Scan protocol |
Beadchip were scanned using iscan standard recommended Illumina scanner setting
|
Data processing |
Genome studio v2011.1
|
|
|
Submission date |
Jan 12, 2022 |
Last update date |
Jan 18, 2022 |
Contact name |
Nurul Syakima Ab Mutalib |
E-mail(s) |
syakima@ppukm.ukm.edu.my
|
Organization name |
Universiti Kebangsaan Malaysia
|
Department |
UKM Medical Molecular Biology Institute
|
Street address |
Jalan Yaacob Latiff
|
City |
Cheras |
State/province |
Kuala Lumpur |
ZIP/Postal code |
56000 |
Country |
Malaysia |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE193535 |
Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K |
|