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Sample GSM5813783 Query DataSets for GSM5813783
Status Public on Jan 17, 2022
Title 260T
Sample type genomic
 
Source name CRC tissue
Organism Homo sapiens
Characteristics gender: F
disease state: Tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Beadchip were scanned using iscan standard recommended Illumina scanner setting
Data processing Genome studio v2011.1
 
Submission date Jan 12, 2022
Last update date Jan 18, 2022
Contact name Nurul Syakima Ab Mutalib
E-mail(s) syakima@ppukm.ukm.edu.my
Organization name Universiti Kebangsaan Malaysia
Department UKM Medical Molecular Biology Institute
Street address Jalan Yaacob Latiff
City Cheras
State/province Kuala Lumpur
ZIP/Postal code 56000
Country Malaysia
 
Platform ID GPL13534
Series (1)
GSE193535 Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K

Data table header descriptions
ID_REF
VALUE Beta value

Data table
ID_REF VALUE
cg00000957 0.841370836
cg00001349 0.806508236
cg00001583 0.098007865
cg00002028 0.083192541
cg00002719 0.077609445
cg00002837 0.458083629
cg00003202 0.044638195
cg00003287 0.254853564
cg00007036 0.942549497
cg00007898 0.033367624
cg00008004 0.117361605
cg00008647 0.131130675
cg00009292 0.143702283
cg00011717 0.903432704
cg00014168 0.614835081
cg00015930 0.974626879
cg00016238 0.897567572
cg00016996 0.969347259
cg00021576 0.118129624
cg00021933 0.912993695

Total number of rows: 409764

Table truncated, full table size 8931 Kbytes.




Supplementary file Size Download File type/resource
GSM5813783_9741779167_R06C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM5813783_9741779167_R06C01_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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