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Sample GSM5813785 Query DataSets for GSM5813785
Status Public on Jan 17, 2022
Title 164T
Sample type genomic
 
Source name CRC tissue
Organism Homo sapiens
Characteristics gender: F
disease state: Tumor
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Beadchip were scanned using iscan standard recommended Illumina scanner setting
Data processing Genome studio v2011.1
 
Submission date Jan 12, 2022
Last update date Jan 18, 2022
Contact name Nurul Syakima Ab Mutalib
E-mail(s) syakima@ppukm.ukm.edu.my
Organization name Universiti Kebangsaan Malaysia
Department UKM Medical Molecular Biology Institute
Street address Jalan Yaacob Latiff
City Cheras
State/province Kuala Lumpur
ZIP/Postal code 56000
Country Malaysia
 
Platform ID GPL13534
Series (1)
GSE193535 Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K

Data table header descriptions
ID_REF
VALUE Beta value

Data table
ID_REF VALUE
cg00000957 0.814079068
cg00001349 0.773725888
cg00001583 0.068184944
cg00002028 0.134619324
cg00002719 0.363022605
cg00002837 0.391280614
cg00003202 0.030015248
cg00003287 0.229619347
cg00007036 0.936278396
cg00007898 0.025826645
cg00008004 0.079303608
cg00008647 0.260016168
cg00009292 0.523463118
cg00011717 0.862105041
cg00014168 0.577121529
cg00015930 0.942192871
cg00016238 0.910690932
cg00016996 0.982734292
cg00021576 0.109495174
cg00021933 0.87243252

Total number of rows: 409764

Table truncated, full table size 9016 Kbytes.




Supplementary file Size Download File type/resource
GSM5813785_9741779168_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM5813785_9741779168_R01C01_Red.idat.gz 4.3 Mb (ftp)(http) IDAT
Processed data included within Sample table

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