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Sample GSM5813786 Query DataSets for GSM5813786
Status Public on Jan 17, 2022
Title 164N
Sample type genomic
 
Source name Normal tissue
Organism Homo sapiens
Characteristics gender: F
disease state: Normal
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Beadchip were scanned using iscan standard recommended Illumina scanner setting
Data processing Genome studio v2011.1
 
Submission date Jan 12, 2022
Last update date Jan 18, 2022
Contact name Nurul Syakima Ab Mutalib
E-mail(s) syakima@ppukm.ukm.edu.my
Organization name Universiti Kebangsaan Malaysia
Department UKM Medical Molecular Biology Institute
Street address Jalan Yaacob Latiff
City Cheras
State/province Kuala Lumpur
ZIP/Postal code 56000
Country Malaysia
 
Platform ID GPL13534
Series (1)
GSE193535 Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K

Data table header descriptions
ID_REF
VALUE Beta value

Data table
ID_REF VALUE
cg00000957 0.824968164
cg00001349 0.786745543
cg00001583 0.096482122
cg00002028 0.106904758
cg00002719 0.106252185
cg00002837 0.549473646
cg00003202 0.03766372
cg00003287 0.199980968
cg00007036 0.940118064
cg00007898 0.016865437
cg00008004 0.054014562
cg00008647 0.301732748
cg00009292 0.187892523
cg00011717 0.87532801
cg00014168 0.624080213
cg00015930 0.968552084
cg00016238 0.908968168
cg00016996 0.974122356
cg00021576 0.09231203
cg00021933 0.887834474

Total number of rows: 409764

Table truncated, full table size 8898 Kbytes.




Supplementary file Size Download File type/resource
GSM5813786_9741779168_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM5813786_9741779168_R01C02_Red.idat.gz 4.3 Mb (ftp)(http) IDAT
Processed data included within Sample table

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