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Sample GSM5813788 Query DataSets for GSM5813788
Status Public on Jan 17, 2022
Title 161N
Sample type genomic
 
Source name Normal tissue
Organism Homo sapiens
Characteristics gender: M
disease state: Normal
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from CRC and normal tissues using Qiagen Dneasy kit according to manufacturer protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Methylation 450K Beadchip using standard Illumina protocol
Scan protocol Beadchip were scanned using iscan standard recommended Illumina scanner setting
Data processing Genome studio v2011.1
 
Submission date Jan 12, 2022
Last update date Jan 18, 2022
Contact name Nurul Syakima Ab Mutalib
E-mail(s) syakima@ppukm.ukm.edu.my
Organization name Universiti Kebangsaan Malaysia
Department UKM Medical Molecular Biology Institute
Street address Jalan Yaacob Latiff
City Cheras
State/province Kuala Lumpur
ZIP/Postal code 56000
Country Malaysia
 
Platform ID GPL13534
Series (1)
GSE193535 Epigenome-wide DNA methylation profiling in colorectal cancer and normal adjacent colon using Infinium Human Methylation 450K

Data table header descriptions
ID_REF
VALUE Beta value

Data table
ID_REF VALUE
cg00000957 0.812967723
cg00001349 0.731966806
cg00001583 0.094478627
cg00002028 0.106809212
cg00002719 0.15786119
cg00002837 0.500419488
cg00003202 0.04880465
cg00003287 0.257716128
cg00007036 0.939994357
cg00007898 0.022580173
cg00008004 0.064584855
cg00008647 0.273520194
cg00009292 0.252560687
cg00011717 0.844304465
cg00014168 0.592775215
cg00015930 0.94181774
cg00016238 0.934831275
cg00016996 0.968432601
cg00021576 0.091875392
cg00021933 0.883550957

Total number of rows: 409764

Table truncated, full table size 9158 Kbytes.




Supplementary file Size Download File type/resource
GSM5813788_9741779168_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM5813788_9741779168_R02C02_Red.idat.gz 4.3 Mb (ftp)(http) IDAT
Processed data included within Sample table

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