NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM5825776 Query DataSets for GSM5825776
Status Public on Jan 20, 2023
Title BALB/c 964
Sample type RNA
 
Source name BM-MSC isolated from control BALB/c at 24 weeks
Organism Mus musculus
Characteristics strain: BALB/c
disease state: control
tissue: bone marrow
cell type: bone marrow-mesenchymal cells (BM-MSCs)
age: 24 weeks
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the Mirneasy mini kit (QIAGEN).
Label biotin
Label protocol RNA was labeled according to manufacturer's recommended protocols
 
Hybridization protocol Hybridization was performed according to manufacturer's standard protocols
Scan protocol Gene microarrays were scanned with the Gene Chip System 3000 Scanner
Description Gene expression data from MSCs isolated from the bone of BALB/c mice (ID 964) at 24 weeks
Data processing Raw data were pre-processed using the sst-RMA algorithm implemented in the Transcriptome Analysis Console software (Thermo Fisher Scientific).
 
Submission date Jan 19, 2022
Last update date Jan 20, 2023
Contact name Milena Perrone
E-mail(s) milenaperrone@gmail.com
Organization name IRCCS Istituto Nazionale dei Tumori
Street address Via Amadeo 42
City Milano
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL23038
Series (1)
GSE194032 Expression data from mesenchymal stem cells isolated from the bone marrow of tumor-bearing NeuT mice and relative BALB/c controls

Data table header descriptions
ID_REF
VALUE sst-RMA signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 10.21363549
AFFX-BioB-5_at 9.458926498
AFFX-BioB-M_at 10.19180518
AFFX-BioC-3_at 10.27520485
AFFX-BioC-5_at 11.03265266
AFFX-BioDn-3_at 12.39863984
AFFX-BioDn-5_at 11.53178201
AFFX-BkGr-GC03_st 3.777907571
AFFX-BkGr-GC04_st 3.713858825
AFFX-BkGr-GC05_st 3.745218735
AFFX-BkGr-GC06_st 3.778251727
AFFX-BkGr-GC07_st 3.832960612
AFFX-BkGr-GC08_st 3.87826791
AFFX-BkGr-GC09_st 3.997784964
AFFX-BkGr-GC10_st 4.155342273
AFFX-BkGr-GC11_st 4.320215704
AFFX-BkGr-GC12_st 4.675402946
AFFX-BkGr-GC13_st 5.17581538
AFFX-BkGr-GC14_st 5.87066685
AFFX-BkGr-GC15_st 6.512742442

Total number of rows: 29129

Table truncated, full table size 871 Kbytes.




Supplementary file Size Download File type/resource
GSM5825776_MN70.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap