|
| Status |
Public on Jan 21, 2022 |
| Title |
Mmp14 wild type SSCs NO2 |
| Sample type |
RNA |
| |
|
| Source name |
SSCs cultured in Collagen gel
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Skeletal stem cells
genotype: Mmp14+/+
age: Cells from 4-6 week old mouse
|
| Treatment protocol |
SSCs isolated from Mmp14 wild type (WT) and Mmp14 knockout (KO) mice, and cultured in 3D collagen gels for 48 hours.
|
| Growth protocol |
SSCs were isolated from 4-6 week old Mmp14 wild type (WT) and Mmp14 knockout (KO) mice.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extracted and purified by a QIAGEN RNeasy Fibrous Tissue Mini kit.
|
| Label |
biotin
|
| Label protocol |
cDNA were prepared according to the Nugen Ovation PicoSL WTA system V2 kit prococol from 10ng toal RNA. Biotinylated cDNA were prepared according to the Nugen Encore Biotin Module from 3.75µg of cDNA.
|
| |
|
| Hybridization protocol |
Following labeling procedure, 3.75µg of biotinylated cDNA were hybridized on Mouse Gene ST 2.1 Strip (4 arrays), and were washed and stained using the Affymetrix Gene Atlas system.
|
| Scan protocol |
Arrays were scanned using the Affymetrix Gene Atlas system
|
| Description |
Gene expression data from SSCs cultured in Collagen gel for 48 hours.
|
| Data processing |
Data was analyzed using the limma and oligo Bioconductor packages implemented in the R-statistical enviroment version 3.3.0 .
|
| |
|
| Submission date |
Jan 20, 2022 |
| Last update date |
Jan 21, 2022 |
| Contact name |
Stephen J Weiss |
| E-mail(s) |
sjweiss@umich.edu
|
| Phone |
734-763-4723
|
| Organization name |
University of Michigan
|
| Department |
Life Sciences Institute
|
| Lab |
Weiss Lab
|
| Street address |
210 Washtenaw Ave
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platform ID |
GPL17400 |
| Series (1) |
| GSE194077 |
Expression data from Skeletal Stem Cells cultured in 3-dimensional (3D) Collagen |
|
