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Sample GSM5837 Query DataSets for GSM5837
Status Public on Apr 09, 2003
Title Spleen vs Untreated B cell Time 0 (set27)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Untreated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from untreated mouse (male c57BL/6) B cells
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE402 Spleen vs Untreated, cultured B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.287068 45510.9 23498.9 65516.8 34900.3 65517 34546 0.69393 5326.91 963.12 1254.51 962 1257 30.5106 49.8464 0
2 -0.176508 86.9525 57.9127 1044.12 1264.5 1030.5 1266 38.7684 78.9259 952.2 1234.09 951 1234 35.9504 56.7601 0
3 -0.000867623 45.5922 45.5012 980.84 1249.64 980 1241 44.9895 41.4828 955.19 1229.51 952 1220 37.3491 62.2683 0
4 0 62.7648 16.1843 948.731 1139.19 942.5 1141.5 28.3881 41.2058 952.75 1237.37 954.5 1232.5 35.3226 58.5239 0
5 -0.0111297 49.0355 47.7948 993 1270.5 985.5 1274.5 34.9836 60.6725 961.969 1247.84 963 1248.5 30.5432 49.4855 0
6 -0.0291175 266.425 249.148 1387.79 1487.29 1381.5 1478 90.3517 100.19 966.484 1241.57 967 1239 33.3187 52.7245 0
7 -0.0529762 51.046 45.1841 1001.67 1255.07 1006 1243 47.8419 68.6871 968.121 1236.32 964 1234 31.2448 48.5905 0
8 0 26.8638 21.3097 952 1203.44 952 1197 19.5959 42.9273 960.936 1222.77 961.5 1223.5 28.5877 40.7513 0
9 0.250994 2748.78 4899.29 5529.08 7178.54 5498 7159 194.032 305.335 979 1250.56 980 1249 29.4362 56.9424 0.83378402
10 0.440671 499.149 1376.9 1805.19 2862.15 1750 2682 293.942 607.081 983.329 1278.16 979 1272 30.7459 58.6412 1.463877376
11 0 30.7559 27.7827 981.923 1276.42 982.5 1292.5 34.1771 47.3313 988.401 1294.61 986.5 1295 33.2234 52.3402 0
12 0.10094 40.1839 50.6981 1013.12 1341.5 1003.5 1340.5 42.9459 69.074 994.581 1313.03 992 1309 33.4935 64.006 0
13 0 31.0244 28.4871 992.731 1327.69 990 1316.5 30.0687 59.9011 1002.1 1339.85 1002.5 1338 33.7185 53.3407 0
14 0.199797 665.153 1053.7 2135.72 2571.2 2159 2546 127.468 191.972 1029.29 1371.22 1031 1380.5 35.0549 53.1109 0.663711268
15 0.283446 1642.61 3154.87 3798.7 5154 2949 4091 2307.74 3157.84 1048.69 1416.45 1046 1413 41.2767 61.5837 0
16 0.339058 1640.77 3581.84 3821.25 5720.5 4128.5 5993.5 864.445 1474.87 1079.72 1461.85 1075 1456 38.6457 62.4292 1.126326296
17 -0.749671 1057.21 188.144 2869.36 1690.23 2133.5 1649 1649.85 173.669 1106.08 1516.3 1099 1515 46.2195 71.8764 0
18 -0.433111 173.511 64.0053 1333.24 1527.4 1324 1517 48.4254 47.421 1093.97 1495.88 1094 1481.5 41.753 72.613 0
19 0.493955 4361.57 13601.8 8084.86 18635.2 8587 19743 1056.32 2631.99 1093.67 1499.79 1088.5 1503 40.1825 63.1881 1.640882992
20 -0.0441151 3591.01 3244.16 7092.33 5468.25 7074.5 5456 639.914 389.765 1122.27 1570.56 1118 1569.5 45.216 75.7564 -0.14654719

Total number of rows: 16273

Table truncated, full table size 1983 Kbytes.




Supplementary data files not provided

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