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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 31, 2023 |
| Title |
synovial fluid (OA) sample 15 |
| Sample type |
SRA |
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| Source name |
synovial fluid
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| Organism |
Equus caballus |
| Characteristics |
tissue: synovial fluid
group: OA
timepoint: 49
horse: Horse4
cell type: extracellular vesicles
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trilink Cleantag Kit
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| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
fastQ quality assessment
cutadapt adater trimming
bowtie1 genome alignment
miRDeep2 miRNA quantification
edgeR differential expression
Genome_build: EquCab3.0 (GCA_002863925.1)
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| Submission date |
Jan 31, 2022 |
| Last update date |
Dec 31, 2023 |
| Contact name |
Andreas B Diendorfer |
| E-mail(s) |
service@tamirna.com
|
| Organization name |
TAmiRNA GmbH
|
| Street address |
Leberstraße 20
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| City |
Wien |
| ZIP/Postal code |
1110 |
| Country |
Austria |
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| Platform ID |
GPL26749 |
| Series (1) |
| GSE195807 |
Small non-coding RNAs in extracellular vesicles derived from equine synovial fluid and plasma in a model of equine osteoarthritis |
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| Relations |
| BioSample |
SAMN25517149 |
| SRA |
SRX13997020 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5851124_HYWCHDRXX_2_143271_ACTTGA.csv.gz |
3.4 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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