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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 07, 2022 |
| Title |
786O_1%_serum_sh2_2 |
| Sample type |
SRA |
| |
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| Source name |
786O_1%_serum_sh2_2
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| Organism |
Homo sapiens |
| Characteristics |
treatment: 1% FBS
transfection: PBRM1 shRNA #2
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| Treatment protocol |
RPMI 10% or 1% FBS
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| Extracted molecule |
total RNA |
| Extraction protocol |
Poly A
Illumina TruSeq V2
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
786O cells with PBRM1 shRNA #2 grown in RPMI with 1% RPMI
|
| Data processing |
cutadapt
Salmon
Deseq2
Genome_build: hg38
Supplementary_files_format_and_content: Deseq2 output, normalized gene expression in TPM
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| Submission date |
Feb 04, 2022 |
| Last update date |
Mar 08, 2022 |
| Contact name |
David Aaron Schoenfeld |
| E-mail(s) |
david.schoenfeld@yale.edu
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| Organization name |
Yale-New Haven Hospital
|
| Department |
Internal Medicine
|
| Street address |
20 York Street
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| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06510 |
| Country |
USA |
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| Platform ID |
GPL18573 |
| Series (2) |
| GSE102807 |
ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 |
| GSE196129 |
The effects of PBRM1 loss on the ccRCC transcriptome |
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| Relations |
| BioSample |
SAMN25651569 |
| SRA |
SRX14043267 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5860595_786O_94_1__2_quant.sf.gz |
2.4 Mb |
(ftp)(http) |
SF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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