|
| Status |
Public on Jan 29, 2023 |
| Title |
Non-diabetic small RNAseq sample #2 [17328_S37_R1_001] |
| Sample type |
SRA |
| |
|
| Source name |
Non-diabetic small RNAseq sample
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: islet
subject status: a non-diabetic individual
molecule subtype: small RNA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared according to the TriLink CleanTag Small RNA Library Preparation Kit protocol
Libraries were prepared using the TriLink CleanTag Small RNA Ligation kit (small RNAseq) or as per Dinh et el, 2020 (ChROseq)
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Islet sample from a non-diabetic individual
processed data file:
DESeq_HP_smRNA_normalized_counts.csv
|
| Data processing |
Sequencing was aligned and quantiitated using miRquant2.0 (small RNAseq) or aligned and quantified using Proseq.
Both sequencing types were processed with DESeq2.
Genome_build: hg19 (small RNAseq) or hg38 (RNAseq)
Supplementary_files_format_and_content: DESeq normalized counts of transcriptional regulatory elements, genes
|
| |
|
| Submission date |
Feb 15, 2022 |
| Last update date |
Jan 29, 2023 |
| Contact name |
Praveen Sethupathy |
| Organization name |
Cornell University
|
| Lab |
Dr. Sethupathy Lab
|
| Street address |
Cornell University College of Veterinary Medicine, Box 17
|
| City |
Ithica |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE196797 |
microRNA Expression in Normal and Diabetic Pancreatic Islets |
|
| Relations |
| BioSample |
SAMN25977867 |
| SRA |
SRX14191660 |
