|
| Status |
Public on Jan 01, 2012 |
| Title |
CBSM-6 mo JI4T2 |
| Sample type |
RNA |
| |
|
| Source name |
Peripheral blood mononuclear cells
|
| Organism |
Homo sapiens |
| Characteristics |
treatment: Cognitive behavioral stress management-6 mo
cell type: peripheral blood mononuclear cell
disease state: breast cancer
gender: female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Human peripheral blood leukocytes were isolated and total RNA was extracted using Qiagen RNEasy.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina beadarray probe synthesis for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
|
| |
|
| Hybridization protocol |
Standard Illumina beadarray hybridization protocol for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
|
| Scan protocol |
Standard Illumina beadarray scan protocol for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
|
| Description |
Illumina HT-12 v4 expression arrays
|
| Data processing |
Gene expression values derived from Illumina GenomeStudio software were subject to quantile normalization, and log2-transformed for statistical analysis.
|
| |
|
| Submission date |
Sep 10, 2010 |
| Last update date |
Aug 09, 2012 |
| Contact name |
Steve Cole |
| Organization name |
UCLA School of Medicine
|
| Department |
Medicine
|
| Street address |
11-934 Factor Bldg, UCLA
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-1678 |
| Country |
USA |
| |
|
| Platform ID |
GPL10904 |
| Series (1) |
| GSE24079 |
Differential gene expression in circulating leukocytes from breast cancer patients treated with Cognitive Behavioral Stress Management |
|
