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Sample GSM601059 Query DataSets for GSM601059
Status Public on Jan 20, 2011
Title 515F
Sample type RNA
 
Source name Human dopamine
Organism Homo sapiens
Characteristics age (y): 66
disease state: Parkinson’s disease
Extracted molecule total RNA
Extraction protocol RNA from 500 DA neurons from the SNc of each specimen were extracted using the Picopure™ RNA isolation kit
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol standard Affy protocols
Scan protocol standard Affy protocols
Description PD
Data processing The data were processed and scaled to a target intensity of 100 for all probe sets by MAS5 in Biocondutor affy package.
 
Submission date Sep 27, 2010
Last update date Jan 20, 2011
Contact name Bin Zheng
Organization name Brigham and Women's hospital
Department Center for Neurologic Diseases
Street address 65 Landsdowne Street
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL1352
Series (1)
GSE24378 Systematic meta-analysis and replication of genome-wide expression studies identifies molecular pathways of Parkinson’s disease

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1053_3p_at 12.46369856
117_3p_at 58.97288262
1494_3p_f_at 119.7328156
1552275_3p_s_at 10.99658607
1552281_3p_at 31.00803171
1552296_3p_at 3.276834861
1552302_3p_at 27.46281934
1552311_3p_a_at 93.48223237
1552321_3p_a_at 54.09396967
1552340_3p_at 16.18136554
1552343_3p_s_at 28.43488237
1552354_3p_at 23.30473548
1552476_3p_s_at 5.998347909
1552480_3p_s_at 54.19881909
1552504_3p_a_at 90.13700718
1552518_3p_s_at 2.386938149
1552528_3p_at 127.5313034
1552535_3p_at 39.28096098
1552566_3p_at 9.502551966
1552575_3p_a_at 5.688909748

Total number of rows: 61359

Table truncated, full table size 1892 Kbytes.




Supplementary file Size Download File type/resource
GSM601059.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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