|
| Status |
Public on Oct 01, 2011 |
| Title |
BreastTumorTissue-HEL_003 |
| Sample type |
RNA |
| |
|
| Source name |
BreastTumorTissue
|
| Organism |
Homo sapiens |
| Characteristics |
10years followup time (months): 33.53
10years vital status: 2 (breast cancer death)
bddm followup time (months): 30.7843943
bddm status: 1 (breast cancer death or distant metastasis)
|
| Treatment protocol |
samples were homogenized with Precellys MK28-R Kit (6800Rpm, 3 x 25 s)
|
| Growth protocol |
Fresh frozen human mammary tumor samples stored in liquid nitrogen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using miRvana miRNA isolation kit (Applied Biosystems) according to manufacturers protocol.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
HEL_003
|
| Data processing |
The data were log base 2 transformed and normalised using quantile normalisation with R.
Data table below does not report controls. For complete tables of normalized and non-normalized data, see supplementary files on Series record.
|
| |
|
| Submission date |
Sep 30, 2010 |
| Last update date |
Oct 01, 2011 |
| Contact name |
Dario Greco |
| E-mail(s) |
dario.greco@tuni.fi
|
| Organization name |
Tampere University
|
| Department |
Faculty of Medicine and Health Technology
|
| Lab |
Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE)
|
| Street address |
Arvo ylpön Katu 34
|
| City |
Tampere |
| ZIP/Postal code |
33520 |
| Country |
Finland |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE24450 |
183 breast tumors from the Helsinki Univerisity Central Hospital with survival information |
|
