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Status
Public on Jun 20, 2005
Title
LIV3
Sample type
RNA
Source name
Liver tissue from WT C57BL/6 male mice
Organism
Mus musculus
Characteristics
Strain: C57BL/6 Gender: male Age: 6-8 weeks Tissue: liver Treatment: wild-type
Extracted molecule
total RNA
Label
biotin
Description
full description of sample found in Elena M. Comelli, Steven R. Head, Tim Gilmartin, Thomas Whisenant, Stuart M. Haslam, Simon J. North, Nyet-Kui Wong, Takashi Kudo, Hisashi Narimatsu, Jeffrey D. Esko, Kurt Drickamer, Anne Dell, and James C. Paulson. (2005) A Focused Microarray Approach to Functional Glycomics: Transcriptional Regulation of the Glycome.
Data processing
dCHIPv1.3, PM-only algorithm
Submission date
Jun 08, 2005
Last update date
Jun 20, 2005
Contact name
Jennifer A Hammond
E-mail(s)
jhammond@scripps.edu
Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/
Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL1981
Series (1)
GSE2781
A Focused Microarray Approach to Functional Glycomics: Transcriptional Regulation of the Glycome
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
115855_U74BTARSEQ_at
365.844
P
0.018555
1405_i_at
136.149
A
0.937979
200004_at
2016.26
P
0.000732
200010_at
375.258
A
0.129639
200012_x_at
628.575
A
0.129639
200017_at
140.377
P
0.030273
200024_at
427.205
A
0.149658
200025_s_at
78.0221
P
0.037598
200026_at
296.014
A
0.080566
200032_s_at
134.453
A
0.080566
200038_s_at
134.694
A
0.129639
200046_at
260.488
P
0.046143
200061_s_at
90.874
A
0.171387
200068_s_at
132.414
A
0.27417
200089_s_at
205.918
A
0.366211
200091_s_at
115.903
A
0.149658
200095_x_at
166.416
P
0.01416
200642_at
407.874
A
0.334473
200643_at
385.876
A
0.601074
200647_x_at
280.377
A
0.601074
Total number of rows: 1814 Table truncated, full table size 54 Kbytes .Supplementary data files not provided