|
| Status |
Public on Jan 12, 2023 |
| Title |
Patient 65 time point 1 replicate 2 |
| Sample type |
SRA |
| |
|
| Source name |
Mixed phenotype acute leukemia (MPAL)
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: B/Myeloid diagnosis -
Sex: Male
age: 54
|
| Treatment protocol |
Patients before and after chemotherapy
|
| Growth protocol |
Patient samples
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Cryopreserved peripheral blood mononuclear cells and peripheral bone marrow mononuclear cell samples
PIP-seq single cell library prep
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
NextSeq 2000 |
| |
|
| Description |
Patient 65 time point 1 replicate 2
|
| Data processing |
The sample is aligned to human GRCh38.p13 with Salmon and quantified with alevin v1.2.0
Assembly: GRCh38.p13
Supplementary files format and content: Matrices are zipped folders of 3 files: (1) sparse matrix, (2) barcodes file, (3) genes file. Raw data are gzipped fastqs, most of which have four files per sample: 2 lanes from 2 reads. Two samples were sequenced on a single lane NovaSeq run, and therefore only have the two reads from a single lane.
|
| |
|
| Submission date |
May 12, 2022 |
| Last update date |
Jan 12, 2023 |
| Contact name |
Iain Christopher Clark |
| Organization name |
University of California, Berkeley
|
| Street address |
374 Stanley Hall
|
| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94720 |
| Country |
USA |
| |
|
| Platform ID |
GPL30173 |
| Series (2) |
| GSE202914 |
Analysis of mixed phenotype acute leukemia |
| GSE202919 |
Microfluidics-free single-cell genomics with templated emulsification |
|
| Relations |
| BioSample |
SAMN28215457 |
| SRA |
SRX15249715 |
