|
Status |
Public on Jan 12, 2023 |
Title |
Patient 873 time point 2 replicate 2 |
Sample type |
SRA |
|
|
Source name |
Mixed phenotype acute leukemia (MPAL)
|
Organism |
Homo sapiens |
Characteristics |
sample type: B/Myeloid diagnosis - Sex: Female age: 76
|
Treatment protocol |
Patients before and after chemotherapy
|
Growth protocol |
Patient samples
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Cryopreserved peripheral blood mononuclear cells and peripheral bone marrow mononuclear cell samples PIP-seq single cell library prep
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
NextSeq 2000 |
|
|
Description |
Patient 873 time point 2 replicate 2
|
Data processing |
The sample is aligned to human GRCh38.p13 with Salmon and quantified with alevin v1.2.0 Assembly: GRCh38.p13 Supplementary files format and content: Matrices are zipped folders of 3 files: (1) sparse matrix, (2) barcodes file, (3) genes file. Raw data are gzipped fastqs, most of which have four files per sample: 2 lanes from 2 reads. Two samples were sequenced on a single lane NovaSeq run, and therefore only have the two reads from a single lane.
|
|
|
Submission date |
May 12, 2022 |
Last update date |
Jan 12, 2023 |
Contact name |
Iain Christopher Clark |
Organization name |
University of California, Berkeley
|
Street address |
374 Stanley Hall
|
City |
Berkeley |
State/province |
CA |
ZIP/Postal code |
94720 |
Country |
USA |
|
|
Platform ID |
GPL30173 |
Series (2) |
GSE202914 |
Analysis of mixed phenotype acute leukemia |
GSE202919 |
Microfluidics-free single-cell genomics with templated emulsification |
|
Relations |
BioSample |
SAMN28215451 |
SRA |
SRX15249719 |