|
| Status |
Public on Mar 02, 2023 |
| Title |
1564 (CF-repaired), |
| Sample type |
SRA |
| |
|
| Source name |
KD_WR_0214_0210_CF
|
| Organism |
Homo sapiens |
| Characteristics |
culture: iPSC-airway epithelium through basal cell intermediate. iPSC-D15CD47/CD26sort- NGFR sort x 2
cell type: iPSC
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
10X Chromium system
NextSeq2000
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
NextSeq 2000 |
| |
|
| Data processing |
The sample was processed using the standard cellranger pipeline
Reads were mapped to GRCh38
Downstream analysis and QC done on Seurat
Differential expression using MAST models
Assembly: GRCh38
Supplementary files format and content: the processed files are the standard output from the cellranger pipeline:
|
| |
|
| Submission date |
May 13, 2022 |
| Last update date |
Mar 02, 2023 |
| Contact name |
Feiya Wang |
| E-mail(s) |
feiyaw@bu.edu
|
| Organization name |
Center for Regenerative Medicine, Boston University
|
| Street address |
670 Albany street, 2nd floor
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02118 |
| Country |
USA |
| |
|
| Platform ID |
GPL30173 |
| Series (2) |
| GSE203008 |
CF (1565) vs CFTR-corrected (1564) iPSC-airway at ALI |
| GSE203009 |
CF vs CFTR-corrected hiPSC-airway at ALI |
|
| Relations |
| BioSample |
SAMN28322872 |
| SRA |
SRX15271533 |
