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Sample GSM619135 Query DataSets for GSM619135
Status Public on May 09, 2011
Title Patient 36
Sample type genomic
 
Source name esophageal adenocarcinoma
Organism Homo sapiens
Characteristics Sex: Male
age: 81 years
chemo-treated: No
histological differentiation: Poorly
days to death or last seen alive: 687
tissue: esophageal adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol standard Illumina protocol
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing Genomic DNA extracted from esophageal adenocarcinoma tumors was genotyped using Illumina HumanCytoSNP-12 Genotyping BeadChips (Illumina).
 
Submission date Nov 08, 2010
Last update date May 09, 2011
Contact name Xin Yi Goh
Organization name Hutchison-MRC Research Centre
Department Cancer Cell Unit
Lab 2.21
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL8856
Series (1)
GSE25201 Integrated analysis of genome-wide copy number and matched expression data reveals novel genes in esophageal adenocarcinoma

Data table header descriptions
ID_REF
VALUE logR ratio
Genotype
GC_Score
Theta
R
B_Allele_Freq

Data table
ID_REF VALUE Genotype GC_Score Theta R B_Allele_Freq
rs3094315 -0.4419597 AB 0.8729528 0.4634323 1.06188 0.4700694
rs2073813 -0.2462522 AB 0.735752 0.4930634 0.8988141 0.4063027
rs2905040 -0.3421432 BB 0.4453174 0.9933298 0.8597915 1
rs12124819 -0.511835 AA 0.4543349 0.05594493 0.302711 0.008976303
rs2980314 -0.2437678 BB 0.4081811 0.9697793 0.6655366 1
rs6684487 -0.01944511 BB 0.6506013 0.9699324 0.9282369 1
rs4245756 -0.04400863 BB 0.6040938 0.9817969 1.388236 0.9999759
rs12086311 0.07973736 BB 0.396442 0.9730493 1.320802 1
rs13303077 -0.1539951 BB 0.4259231 0.9867499 0.9244093 1
rs28625089 0.1019425 BB 0.7624041 0.9892118 2.096252 0.9971921
rs4475691 -0.202545 BB 0.9449533 0.9902642 0.9210153 1
rs28587382 0.08578009 BB 0.8319896 0.9701173 0.9017232 1
rs13303029 -0.03682519 BB 0.4081811 0.9663425 1.090767 0.9994636
rs2340589 -0.04673529 BB 0.6959839 0.9525114 1.256608 1
rs28576697 -0.07596133 AB 0.6095425 0.412328 1.848787 0.5080326
rs1110052 0.1994989 AB 0.7895571 0.6964087 1.494198 0.5760865
rs7523549 0.06556252 BB 0.8954807 0.9803222 0.6864626 0.999661
rs2272756 0.08539698 AB 0.9470999 0.3934479 1.203925 0.3895869
rs28711536 -0.04402074 BB 0.8353744 0.9751377 0.7767379 1
rs13303010 -1.190741 AA 0.9197229 0.0432836 0.3424808 0.008025695

Total number of rows: 299671

Table truncated, full table size 17333 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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