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Sample GSM619139 Query DataSets for GSM619139
Status Public on May 09, 2011
Title Patient 138
Sample type genomic
 
Source name esophageal adenocarcinoma
Organism Homo sapiens
Characteristics Sex: Male
age: 75 years
chemo-treated: Yes
histological differentiation: Poorly
days to death or last seen alive: 227
tissue: esophageal adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol standard Illumina protocol
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing Genomic DNA extracted from esophageal adenocarcinoma tumors was genotyped using Illumina HumanCytoSNP-12 Genotyping BeadChips (Illumina).
 
Submission date Nov 08, 2010
Last update date May 09, 2011
Contact name Xin Yi Goh
Organization name Hutchison-MRC Research Centre
Department Cancer Cell Unit
Lab 2.21
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL8856
Series (1)
GSE25201 Integrated analysis of genome-wide copy number and matched expression data reveals novel genes in esophageal adenocarcinoma

Data table header descriptions
ID_REF
VALUE logR ratio
Genotype
GC_Score
Theta
R
B_Allele_Freq

Data table
ID_REF VALUE Genotype GC_Score Theta R B_Allele_Freq
rs3094315 0.3027731 AA 0.8729528 0.02067697 1.364128 0
rs2073813 -0.1330206 BB 0.745159 0.9845965 0.8818093 1
rs2905040 -0.6043723 BB 0.4453174 0.9840839 0.716893 0.9975756
rs12124819 -0.6529276 AA 0.4543349 0.01925776 0.2704825 0
rs2980314 -0.3397811 BB 0.4081811 0.9736257 0.6226859 1
rs6684487 -0.4214787 BB 0.6506013 0.9647772 0.7044172 1
rs4245756 0.009856244 BB 0.6040938 0.9803523 1.443017 0.9986331
rs12086311 -0.06690354 BB 0.396442 0.9756357 1.193148 1
rs13303077 0.04224026 BB 0.4259231 0.9873489 1.0591 1
rs28625089 0.3436127 BB 0.7624041 0.9979462 2.454992 1
rs4475691 -0.1723359 BB 0.9449533 0.986744 0.9425854 1
rs28587382 -0.1668551 BB 0.8319896 0.9744444 0.7553049 1
rs13303029 -0.2367152 BB 0.4081811 0.9754368 0.9496399 1
rs2340589 -0.2320711 BB 0.6959839 0.9642284 1.093245 1
rs28576697 0.1199222 AA 0.6095425 0.1073758 1.883289 0.00624832
rs1110052 0.2661142 AA 0.7895571 0.06216937 1.076214 0
rs7523549 0.1303048 BB 0.8954807 0.9765379 0.7198405 0.9964228
rs2272756 -0.2790893 BB 0.947103 0.9882724 0.75876 1
rs28711536 0.01620532 BB 0.8353744 0.980452 0.807601 1
rs13303010 -1.455517 AA 0.8984522 0.05589866 0.2864703 0.02175975

Total number of rows: 299671

Table truncated, full table size 17273 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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