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Sample GSM619298 Query DataSets for GSM619298
Status Public on Nov 11, 2010
Title Kidney Glomerulus
Sample type SAGE
Anchor Sau3A
Tag Count 53508
Tag Length 15
 
Source name microdissected glomeruli from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney glomeruli
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description Library was obtained from microdissected glomeruli from male CD1 mice under control condition. The lirary was generated using Sau3AI as anchoring enzyme and BsmFI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data are provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AACAAATCTCCTAGG 2470 46161.32
TTTATAATTTGAGAG 1344 25117.74
ACTGTTTTGTGGGGG 1228 22949.84
TCTTGACCAGAGGGG 976 18240.26
AACTTATACATCTTC 453 8466.02
ACTCTGGAGTTCAGC 385 7195.19
AATGTGCGGATTGAG 328 6129.92
CTGGATGAGAAATGC 308 5756.15
AAACTTTACCATTAT 287 5363.68
TGCTTCAATAATTTA 277 5176.80
TGACTCCCTCTTCTG 273 5102.04
TAACCATAGCTTTAT 226 4223.67
ACCGACCGCATCGAG 220 4111.53
TGATGCCCTCTTCTG 184 3438.74
TTTGCCGGCAAGCAG 176 3289.23
AAACAACCCAACAGG 169 3158.41
TGTGATGGTGTTCTA 160 2990.21
GCTGGACAGGTGGCA 158 2952.83
ACGAGTTCGAGGCCA 151 2822.01
ACCCGACGCAAGTGG 135 2522.99

Total number of rows: 11110

Table truncated, full table size 262 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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