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Sample GSM619299 Query DataSets for GSM619299
Status Public on Nov 11, 2010
Title Kidney Proximal Tubule, S1
Sample type SAGE
Anchor Sau3A
Tag Count 83826
Tag Length 15
 
Source name microdissected proximal tubule, S1 from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney proximal tubule, S1
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description .Library was obtained from microdissected Proximal tubule S1 from male CD1 mice under control condition. The library was generated using Sau3AI as anchoring enzyme and MmeI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data were provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
CTGGATGAGAAATGC 7476 89184.74
TGCTTCAATAATTTA 2236 26674.30
TTTATAATTTGAGAG 1599 19075.23
AACTTATACATCTTC 1446 17250.02
ACCAGGACCTTGAAA 1147 13683.11
AACAAATCTCCTAGG 746 8899.39
ACTTCCTCGTTCTTT 743 8863.60
TTAAAAAAAAAAAAA 606 7229.26
TGATGCCCTCTTCTG 541 6453.84
ATGGCCCAGACCTGA 535 6382.27
ATGGACTTCACGCCA 496 5917.02
TGACTCCCTCTTCTG 491 5857.37
TCATTATATAAAATA 484 5773.86
TCTACACGAAGTGCC 481 5738.08
AGGAATCCAGGCCAG 452 5392.12
AACATTCCTTATTGT 450 5368.26
CTTAACTTCCTCTCT 434 5177.39
GCTGGACAGGTGGCA 392 4676.35
GTTCTCACCCCGCAG 389 4640.56
TAACCATAGCTTTAT 369 4401.98

Total number of rows: 13976

Table truncated, full table size 330 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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