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Status |
Public on Nov 17, 2010 |
Title |
Hec50_neg_rep_3 |
Sample type |
RNA |
|
|
Source name |
scrambled negative control
|
Organism |
Homo sapiens |
Characteristics |
cell line: Hec50 cell type: endometrial cancer
|
Treatment protocol |
Cells were treated with 60 nM miR-200c mimic or scrambled negative control (Applied Biosystems) for 48 hrs prior to extraction
|
Growth protocol |
Cells were grown in DMEM supplemented with L-glutamine and 10% FBS in an incubator at 37 degrees and 5% CO2
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to manufacturer's directions. RNA integrity was confirmed using an Agilent Bioanalyzer (Agilent, Palo Alto, CA)
|
Label |
biotin
|
Label protocol |
Labeled complementary RNA was made using the GeneChip_IVT labeling kit (Affymetrix, Inc., Santa Clara, CA)
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|
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Hybridization protocol |
20 ug biotin-labeled cDNA was fragmented and hybridized.
|
Scan protocol |
Microarray analysis was performed using Affymetrix gene chips (HuFL-U133 plus2) and scanned using Affymetrix Genechip Scanner 3000
|
Description |
Endometrial cancer cell line (Hec50) mock transfected, or transfected with scrambled negative control or miR-200c
|
Data processing |
All entities: Data normalized to chip. 1_5 fold 200c vs mock and neg: Data was analyzed using Genespring GX 9.0 (Agilent). Data was filtered using a 1.5 fold change cutoff and a p value of 0.05 (ANOVA, with Benjamini Hochberg FDR multiple testing correction).
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|
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Submission date |
Nov 15, 2010 |
Last update date |
Nov 17, 2010 |
Contact name |
Erin N. Howe |
E-mail(s) |
erin.howe@ucdenver.edu
|
Organization name |
University of Colorado at Denver, Anschutz Medical Campus
|
Department |
Pathology
|
Lab |
Richer Lab
|
Street address |
UCD AMC, Mail Stop 8104 PO Box 6511
|
City |
Aurora |
State/province |
CO |
ZIP/Postal code |
80045 |
Country |
USA |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE25332 |
Restoring miR-200c to aggressive endometrial cancer cell line |
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