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Sample GSM627228 Query DataSets for GSM627228
Status Public on Apr 30, 2011
Title Exposed_AC/SCC
Sample type RNA
 
Source name Lung Tissue
Organism Homo sapiens
Characteristics gender: Male
agent: asbestos
disease state: AC/SCC
tissue: lung tumor
asbestos-fiber count: 145
Growth protocol The tissues were maintained at -70°C prior to extraction
Extracted molecule total RNA
Extraction protocol Total RNA extraction was performed by using the miRNeasy Mini Kit (Qiagen, Valencia, CA, USA) according to the manufacturer's protocol.
Label Cy3
Label protocol Agilent’s miRNA Complete Labeling and Hybridization Kit V2 (Protocol Version 2.1, Agilent Technologies, Palo Alto, CA, USA) was utilized for processing the samples.
 
Hybridization protocol Agilent’s miRNA Complete Labeling and Hybridization Kit V2 (Protocol Version 2.1, Agilent Technologies, Palo Alto, CA, USA) was utilized for processing the samples.
Scan protocol High-resolution Microarray Scanner (G2565CA, Agilent Technologies, Palo Alto, CA, USA) was used to scan the microarrays and the images were processed with Agilent Feature Extraction Software v. 9.5.
Description asbestos-fiber_count 145
Data processing Images were processed with Agilent Feature Extraction Software v. 9.5. The data was analyzed using Chipster version 1.4.2 (http://chipster.csc.fi/).
 
Submission date Nov 19, 2010
Last update date Apr 30, 2011
Contact name Mohamed Guled
E-mail(s) mohamed.guled@helsinki.fi
Organization name Haartman Institute, University of Helsinki
Department Department of Pathology
Lab CMG-Lab
Street address Haarmaninkatu 3
City Helsinki
ZIP/Postal code 00014
Country Finland
 
Platform ID GPL7731
Series (1)
GSE25508 Integrative Analysis of microRNA, mRNA and DNA Copy Number Data Reveals Asbestos-Related Changes in Non-Small Cell Lung Cancer

Data table header descriptions
ID_REF
VALUE gMedianSignal

Data table
ID_REF VALUE
1 8067.5
2 81
3 80
4 78
5 74
6 86.5
7 76
8 74.5
9 90
10 73.5
11 78
12 74
14 84
15 73
16 78
17 75
18 99
19 83
20 77.5
21 99

Total number of rows: 13737

Table truncated, full table size 119 Kbytes.




Supplementary file Size Download File type/resource
GSM627228_200109_251911811174_S01_miRNA_105_Dec08_1_2.txt.gz 827.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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