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GEO accession:
Sample GSM62734
Query DataSets for GSM62734
Status
Public on May 22, 2007
Title
C5 CTRL kidney 4 months No. 5
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
CTRL kidney 4 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C5 CTRL kidney 4 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
james.holzwarth@rdls.nestle.com
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.35308
A
0.883887
AFFX-MurIL10_at
7.76806
A
0.340661
AFFX-MurIL4_at
2.82352
A
0.559354
AFFX-MurFAS_at
1.39446
A
0.794268
AFFX-BioB-5_at
63.517
P
0.0309764
AFFX-BioB-M_at
130.441
P
8.14E-05
AFFX-BioB-3_at
69.4333
P
8.14E-05
AFFX-BioC-5_at
186.484
P
0.000146581
AFFX-BioC-3_at
116.023
P
0.000169227
AFFX-BioDn-5_at
167.937
P
0.000662269
AFFX-BioDn-3_at
997.763
P
0.000126798
AFFX-CreX-5_at
2248.2
P
4.43E-05
AFFX-CreX-3_at
3599.48
P
4.43E-05
AFFX-BioB-5_st
20.6786
A
0.185131
AFFX-BioB-M_st
21.8765
A
0.195266
AFFX-BioB-3_st
3.03614
A
0.916408
AFFX-BioC-5_st
3.00391
A
0.891021
AFFX-BioC-3_st
2.17557
A
0.860518
AFFX-BioDn-5_st
11.9282
A
0.300606
AFFX-BioDn-3_st
24.0616
A
0.195266
Total number of rows:
8799
Table truncated, full table size
283 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62734.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
GSM62734.EXP.gz
479 b
(ftp)
(http)
EXP
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